| Colchester Town | | 2004 | | First Qualifying Round | 05-09-2004 | | Colchester Town | Buxton | 0-8 | | 2005 | | First Qualifying Round | 11-09-2005 | | South Notts | Colchester Town | 5-0 | | 2006 | | Preliminary Round | 10-09-2006 | | Colchester Town | Chelmsford City | 1-6 | | 2010 | | First Qualifying Round | 03-10-2010 | | C&K Basildon | Colchester Town | 1-2 | | Second Qualifying Round | 24-10-2010 | | Barking | Colchester Town | 3-2 | | 2012 | | First Qualifying Round | 30-09-2012 | | AFC Sudbury | Colchester Town | 5-2 | | 2013 | | First Qualifying Round | 22-09-2013 | | Colchester Town | Haverhill Rovers | 5-0 | | Second Qualifying Round | 06-10-2013 | | Colchester Town | Leighton United Vixens | 1-3 | | 2014 | | Preliminary Round | 07-09-2014 | | Colchester Town | Takeley | W/O | | First Qualifying Round | 28-09-2014 | | Southendian | Colchester Town | 2-3 | | Second Qualifying Round | 12-10-2014 | | Colchester Town | Brentwood Town | 2-0 | | Third Qualifying Round | 02-11-2014 | | Ipswich Town | Colchester Town | 2-1 | |
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| 2015 | | Second Qualifying Round | 20-09-2015 | | Colchester Town | Silver End United | 5-0 | | Third Qualifying Round | 11-10-2015 | | Colchester Town | Hemel Hempstead Town | 1-2 | | 2016 | | Second Qualifying Round | 18-09-2016 | | Colchester Town | AFC Sudbury | 0-3 | | 2017 | | First Qualifying Round | 03-09-2017 | | Colchester Town | Bungay Town | 2-4 |
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