| Basingstoke Town | | 1997 | | First Round | 28-09-1997 | | Basingstoke Town | Bristol City | 4-2 | | Second Round | 02-11-1997 | | Basingstoke Town | Reading Royals | 0-8 | | 1998 | | First Round | 27-09-1998 | | Basingstoke Town | London Women | 2-1 | | Second Round | 01-11-1998 | | Denham United | Basingstoke Town | 6-0 | | 1999 | | Extra Preliminary Round | 12-09-1999 | | Malling | Basingstoke Town | 2-3 | | Preliminary Round | 26-09-1999 | | Basingstoke Town | Maidstone United | 2-2 | |
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| 2000 | | Extra Preliminary Round | 10-09-2000 | | Billericay Town | Basingstoke Town | 2-0 | | 2009 | | First Qualifying Round | 27-09-2009 | | Eastleigh | Basingstoke Town | 0-5 | | Second Qualifying Round | 11-10-2009 | | University Of Portsmouth | Basingstoke Town | 3-2 | | 2013 | | First Qualifying Round | 22-09-2013 | | Andover New Street | Basingstoke Town | 0-1 | | Second Qualifying Round | 06-10-2013 | | Downend Flyers | Basingstoke Town | 0-1 | | Third Qualifying Round | 03-11-2013 | | St Nicholas | Basingstoke Town | 3-2 | | 2014 | | First Qualifying Round | 28-09-2014 | | Poole Town | Basingstoke Town | 4-3 | |
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| 2015 | | First Qualifying Round | 06-09-2015 | | Cheltenham Civil Service | Basingstoke Town | 1-3 | | Second Qualifying Round | 20-09-2015 | | Downend Flyers | Basingstoke Town | 0-4 | | Third Qualifying Round | 11-10-2015 | | Basingstoke Town | Fulham Foundation | 0-2 | | 2016 | | Third Qualifying Round | 09-10-2016 | | Billericay Town | Basingstoke Town | 1-2 | | Fourth Qualifying Round | 20-11-2016 | | Plymouth Argyle | Basingstoke Town | 3-1 | | 2017 | | Third Qualifying Round | 08-10-2017 | | FC Chippenham | Basingstoke Town | 1-6 | | First Round | 12-11-2017 | | Plymouth Argyle | Basingstoke Town | W/O | |
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| 2018 | | First Qualifying Round | 02-09-2018 | | Basingstoke Town | AFC Bournemouth | 0-13 | | 2023 | | First Qualifying Round | 10-09-2023 | | Basingstoke Town | Weymouth | 2-4 | | 2024 | | First Qualifying Round | 01-09-2024 | | Basingstoke Town | Longham | 1-2 |
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