| Peterborough Pythons | | 1993 | | First Round | 19-09-1993 | | St Germaine | Peterborough Pythons | 2-0 | | Peterborough United | | 1999 | | First Round | 10-10-1999 | | Peterborough United | Chesterfield | 2-1 | | Second Round | 07-11-1999 | | Crowborough Athletic | Peterborough United | 2-3 | | Third Round | 18-12-1999 | | Barking | Peterborough United | 8-2 | | 2000 |  | | First Round | 29-10-2000 | | Peterborough United | Derby County | 0-2 | | 2001 | | First Round | 28-10-2001 | | Peterborough United | Norwich City Racers | 2-2 | | Second Round | 11-11-2001 | | Loughborough Students | Peterborough United | 7-1 | |
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| 2002 | | First Round | 03-11-2002 | | Peterborough United | Northampton Town | 2-1 | | Second Round | 17-11-2002 | | Peterborough United | Ilkeston | 1-6 | | 2003 | | Second Qualifying Round | 28-09-2003 | | Peterborough United | Stone Dominoes | 3-1 | | First Round | 26-10-2003 | | Cambridge United | Peterborough United | 1-0 |
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