| Tranmere Rovers | | 1991 | | First Round - Group 5 | 15-09-1991 | | Rossendale | Tranmere Rovers | 1-2 | | Second Round - Group 5 | 06-10-1991 | | Broadoak | Tranmere Rovers | 2-4 | | Third Round - Group 5 | 03-11-1991 | | Tranmere Rovers | Manchester United | 3-4 | | 1992 | | First Round - Group 4 | 13-09-1992 | | Aston Villa | Tranmere Rovers | 1-5 | | 2nd Round - Group 4 | 04-10-1992 | | Tranmere Rovers | Birmingham City | 8-2 | | 3rd Round - Group 4 | 01-11-1992 | | Abbeydale Alvechurch | Tranmere Rovers | 6-0 | | 1993 | | First Round | 19-09-1993 | | Tranmere Rovers | Rd. Stockport | 8-2 | | Second Round | 17-10-1993 | | Haslington | Tranmere Rovers | 1-5 | | Third Round | 14-11-1993 | | Tranmere Rovers | Sheffield Wednesday | 2-4 | | 1994 | | First Round | 18-09-1994 | | Stockport | Tranmere Rovers | 1-5 | | Second Round | 16-10-1994 | | Tranmere Rovers | Cleveland | 8-0 | | Third Round | 13-11-1994 | | Tranmere Rovers | Sheffield Wednesday | 5-5 | | Third Round | 20-11-1994 | | Sheffield Wednesday | Tranmere Rovers | 2-5 | | Fourth Round | 04-12-1994 | | Tranmere Rovers | Leasowe Pacific | 1-3 | | 1995 | | Second Round | 15-10-1995 | | Rochdale | Tranmere Rovers | 0-9 | | Third Round | 12-11-1995 | | Tranmere Rovers | Garswood / St Helens United | 2-3 | | 1996 | | Fourth Round | 05-01-1997 | | Tranmere Rovers | Wembley | 1-2 | |
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| 1997 | | Fourth Round | 11-01-1998 | | Tranmere Rovers | Berkhamsted Town | 4-2 | | Fifth Round | 01-02-1998 | | Tranmere Rovers | Garswood Saints | 1-2 | | 1998 | | Fourth Round | 17-01-1999 | | Tranmere Rovers | Liverpool | 2-1 | | Fifth Round | 07-02-1999 | | Three Bridges | Tranmere Rovers | 0-1 | | Quarter Final | 07-03-1999 | | Reading Royals | Tranmere Rovers | 3-5 | | Semi Final | 04-04-1999 | | Southampton Saints | Tranmere Rovers | 2-1 | | 1999 | | Fourth Round | 09-01-2000 | | Croydon | Tranmere Rovers | 4-0 | | 2000 | | Fourth Round | 07-01-2001 | | Tranmere Rovers | Doncaster Belles | 2-3 | | 2001 | | Fourth Round | 13-01-2002 | | Tranmere Rovers | Sunderland AFC | 4-2 | | Fifth Round | 10-02-2002 | | Tranmere Rovers | Wolverhampton Wanderers | 4-1 | | Quarter Final | 17-02-2002 | | Tranmere Rovers | Oldham Curzon | 6-1 | | Semi Final | 31-03-2002 | | Tranmere Rovers | Doncaster Belles | 1-3 | | 2002 | | Fourth Round | 05-01-2003 | | Arsenal | Tranmere Rovers | 2-0 | | 2003 | | Fourth Round | 04-01-2004 | | Tranmere Rovers | Brighton & Hove Albion | 5-3 | | Fifth Round | 25-01-2004 | | Tranmere Rovers | Sheffield Wednesday | 1-0 | | Quarter Final | 08-02-2004 | | Tranmere Rovers | Birmingham City | 2-3 | | 2004 | | Third Round | 05-12-2004 | | Tranmere Rovers | Aston Villa | 3-1 | | Fourth Round | 09-01-2005 | | Tranmere Rovers | Langford | 3-1 | | Fifth Round | 30-01-2005 | | Millwall Lionesses | Tranmere Rovers | 1-3 | | Quarter Final | 13-02-2005 | | Tranmere Rovers | Bristol Rovers | 1-7 | | 2005 | | Third Round | 04-12-2005 | | Liverpool | Tranmere Rovers | 2-1 | | 2006 | | Third Round | 03-12-2006 | | Crewe Alexandra | Tranmere Rovers | 1-3 | | Fourth Round | 07-01-2007 | | Whitley Bay | Tranmere Rovers | 1-2 | | Fifth Round | 04-02-2007 | | Bristol Academy | Tranmere Rovers | 3-1 | |
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| 2007 | | Third Round | 02-12-2007 | | Sunderland AFC | Tranmere Rovers | 5-1 | | 2008 | | Third Round | 21-12-2008 | | Tranmere Rovers | Middlesbrough | 1-3 | | 2009 | | First Round | 15-11-2009 | | Tranmere Rovers | Rotherham United | 1-6 | | 2010 | | 3rd Qualifying Round | 14-11-2010 | | Whitley Bay | Tranmere Rovers | 2-1 | | 2011 | | 1st Qualifying Round | 02-10-2011 | | Bolton Wanderers | Tranmere Rovers | 2-5 | | 2nd Qualifying Round | 23-10-2011 | | Tranmere Rovers | Blackpool | 3-2 | | 3rd Qualifying Round | 13-11-2011 | | Tranmere Rovers | Sheffield Wednesday | 0-4 | | 2012 | | 1st Qualifying Round | 30-09-2012 | | Accrington Girls & Ladies | Tranmere Rovers | 3-5 | | 2nd Qualifying Round | 14-10-2012 | | Tranmere Rovers | Preston North End Ladies | 3-0 | | 3rd Qualifying Round | 11-11-2012 | | Crewe Alexandra | Tranmere Rovers | 3-1 | | 2013 | | 3rd Qualifying Round | 03-11-2013 | | Tranmere Rovers | Wakefield | 6-0 | | First Round | 01-12-2013 | | Chester Le Street Town | Tranmere Rovers | 0-1 | | Second Round | 19-01-2014 | | Middlesbrough | Tranmere Rovers | 4-0 | | 2014 | | 3rd Qualifying Round | 02-11-2014 | | Leeds | Tranmere Rovers | 2-0 | | 2015 | | 3rd Qualifying Round | 11-10-2015 | | Hull City | Tranmere Rovers | 1-1 | | Fourth Qualifying Round | 22-11-2015 | | Tranmere Rovers | Steel City Wanderers | 3-0 | | First Round | 13-12-2015 | | Tranmere Rovers | Whitley Bay | 2-3 | |
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| 2016 | | 3rd Qualifying Round | 09-10-2016 | | Accrington Girls & Ladies | Tranmere Rovers | 3-0 | | 2017 | | 2nd Qualifying Round | 17-09-2017 | | CMB | Tranmere Rovers | 2-1 | | 2018 | | Preliminary Round | 19-08-2018 | | Tranmere Rovers | Chester | 7-0 | | 1st Qualifying Round | 02-09-2018 | | Tranmere Rovers | Bury | 6-3 | | 2nd Qualifying Round | 23-09-2018 | | Tranmere Rovers | Boro Rangers | 0-1 | | 2019 | | Preliminary Round | 01-09-2019 | | FC United Of Manchester | Tranmere Rovers | 5-0 | | 2020 | | Extra Preliminary Round | 06-09-2020 | | Tranmere Rovers | Fleetwood Town Wrens | 2-3 | | 2021 | | 2nd Qualifying Round | 03-10-2021 | | West Didsbury & Chorlton | Tranmere Rovers | 0-1 | | 3rd Qualifying Round | 24-10-2021 | | Tranmere Rovers | Cheadle Town Stingers | 2-2 | |
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| 2022 | | 2nd Qualifying Round | 02-10-2022 | | Tranmere Rovers | Mancunian Unity | 6-1 | | 3rd Qualifying Round | 23-10-2022 | | Accrington Girls & Ladies | Tranmere Rovers | 3-3 | | First Round | 13-11-2022 | | Tranmere Rovers | Burnley | 0-9 | |
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| 2023 | | 2nd Qualifying Round | 01-10-2023 | | Pilkington | Tranmere Rovers | 0-9 | | 3rd Qualifying Round | 22-10-2023 | | Tranmere Rovers | Chester Le Street Town | 1-1 | |
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| 2024 | | 2nd Qualifying Round | 22-09-2024 | | Tranmere Rovers | Bolton Wanderers | 3-1 | | 3rd Qualifying Round | 13-10-2024 | | Penrith AFC | Tranmere Rovers | 2-2 | |
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